CVS time sorted logs


Time Revision Author Filename
2009/06/04 10:19:28 1.35 drambald FancyGene/Paint.pm
2009/06/04 10:19:28 1.41 drambald FancyGene/Load.pm
2009/06/04 10:19:28 1.33 drambald FancyGene/Config.pm
2009/06/04 10:19:28 1.53 drambald fancygene.pl
Oval shape for UTRs
2009/06/03 13:19:05 1.34 drambald FancyGene/Paint.pm
2009/06/03 13:19:05 1.20 drambald FancyGene/Scale.pm
2009/06/03 13:19:05 1.24 drambald FancyGene/Data.pm
2009/06/03 13:19:05 1.52 drambald fancygene.pl
Unscaled genes
2009/06/03 11:31:13 1.51 drambald fancygene.pl
CSS and interface modified
2009/05/28 15:24:11 1.33 drambald FancyGene/Paint.pm
2009/05/28 15:24:10 1.40 drambald FancyGene/Load.pm
Exon mode: oval and relative gradient
2009/05/28 15:04:28 1.32 drambald FancyGene/Config.pm
2009/05/28 15:04:28 1.50 drambald fancygene.pl
Fixed slow re-draw bug: was a regression intriduced with image size on output page
2009/05/28 09:50:26 1.32 drambald FancyGene/Paint.pm
2009/05/28 09:50:26 1.31 drambald FancyGene/Config.pm
2009/05/28 09:50:25 1.49 drambald fancygene.pl
Review Bioinformatics paper: new shapes in testing
2009/05/26 16:53:35 1.31 drambald FancyGene/Paint.pm
2009/05/26 16:53:35 1.39 drambald FancyGene/Load.pm
2009/05/26 16:53:35 1.30 drambald FancyGene/Config.pm
2009/05/26 16:53:35 1.48 drambald fancygene.pl
End of history and fixed BACK. BUG with XML::Simple slow down re-draw
2009/05/26 12:42:02 1.30 drambald FancyGene/Paint.pm
2009/05/26 12:42:02 1.38 drambald FancyGene/Load.pm
2009/05/26 12:42:02 1.29 drambald FancyGene/Config.pm
2009/05/26 12:42:02 1.47 drambald fancygene.pl
History table: step 1
2009/05/21 14:13:53 1.29 drambald FancyGene/Paint.pm
2009/05/21 14:13:53 1.37 drambald FancyGene/Load.pm
2009/05/21 14:13:53 1.28 drambald FancyGene/Config.pm
2009/05/21 14:13:53 1.19 drambald FancyGene/Scale.pm
2009/05/21 14:13:53 1.46 drambald fancygene.pl
Legend options
2009/05/21 09:50:09 1.45 drambald fancygene.pl
Moved options to the right
2009/05/19 12:33:36 1.28 drambald FancyGene/Paint.pm
2009/05/19 12:33:35 1.36 drambald FancyGene/Load.pm
2009/05/19 12:33:35 1.44 drambald fancygene.pl
Data inside the XML file
2009/05/18 15:20:48 1.27 drambald FancyGene/Paint.pm
2009/05/18 15:20:48 1.35 drambald FancyGene/Load.pm
2009/05/18 15:20:48 1.27 drambald FancyGene/Config.pm
2009/05/18 15:20:48 1.18 drambald FancyGene/Scale.pm
2009/05/18 15:20:48 1.23 drambald FancyGene/Data.pm
2009/05/18 15:20:48 1.43 drambald fancygene.pl
XML refactoring step II
2009/05/14 10:38:08 1.42 drambald fancygene.pl
Fixed bug in lof file link
2009/05/13 16:36:45 1.26 drambald FancyGene/Config.pm
2009/05/13 16:36:44 1.41 drambald fancygene.pl
Major Revision Refactoring Iteration 1
2009/05/13 15:32:46 1.22 drambald FancyGene/Data.pm
2009/05/13 15:32:46 1.40 drambald fancygene.pl
Fixed BUG in the simple format and autolocus
2009/02/06 14:30:13 1.34 drambald FancyGene/Load.pm
2009/02/06 14:30:13 1.39 drambald fancygene.pl
Change in Load and fancygene.pl to handle a locus label parameter
2009/02/06 11:21:43 1.26 drambald FancyGene/Paint.pm
2009/02/06 11:21:43 1.33 drambald FancyGene/Load.pm
2009/02/06 11:21:43 1.21 drambald FancyGene/Data.pm
2009/02/06 11:21:43 1.14 drambald FancyGene/Errors.pm
2009/02/06 11:21:43 1.38 drambald fancygene.pl
Big change in Load, Data and fancygene.pl to handle locus LABEL in GFF, GTF and remote mode
2009/01/30 15:46:55 1.25 drambald FancyGene/Paint.pm
2009/01/30 15:46:55 1.32 drambald FancyGene/Load.pm
2009/01/30 15:46:55 1.17 drambald FancyGene/Scale.pm
2009/01/30 15:46:55 1.20 drambald FancyGene/Data.pm
2009/01/30 15:46:55 1.37 drambald fancygene.pl
Implemented the locus label (if not general locus): may be this have generated some bugs. Need testing...
2009/01/27 12:34:59 1.36 drambald fancygene.pl
Modified header in result page
2009/01/22 14:07:49 1.24 drambald FancyGene/Paint.pm
2009/01/22 14:07:49 1.31 drambald FancyGene/Load.pm
2009/01/22 14:07:49 1.35 drambald fancygene.pl
More changes in the graphical interface and pasing of parameters
2009/01/22 10:25:39 1.23 drambald FancyGene/Paint.pm
2009/01/22 10:25:39 1.30 drambald FancyGene/Load.pm
2009/01/22 10:25:39 1.25 drambald FancyGene/Config.pm
2009/01/22 10:25:39 1.34 drambald fancygene.pl
Big changes in the graphical interface and pasing of parameters
2009/01/21 10:11:59 1.1 drambald utils/cvs2html
2009/01/21 10:11:58 1.1 drambald updatelog.sh
Adding updatelog.sh and utils directory (with cvs2html)
2008/11/28 12:30:07 1.33 drambald fancygene.pl
small modification at the update objects field
2008/11/14 15:23:25 1.22 drambald FancyGene/Paint.pm
2008/11/14 15:23:25 1.29 drambald FancyGene/Load.pm
2008/11/14 15:23:25 1.19 drambald FancyGene/Data.pm
2008/11/14 15:23:25 1.32 drambald fancygene.pl
Sortable list of object (ajax based on mootools), still some probems with visualization of buttons. Must find a workaround or change strategy
2008/11/13 15:39:26 1.21 drambald FancyGene/Paint.pm
Modified the intron hat, now utr introns hat is aligned with exon intron hat
2008/11/13 15:03:02 1.20 drambald FancyGene/Paint.pm
2008/11/13 15:03:02 1.16 drambald FancyGene/Scale.pm
new changes at scale/legend: scale centered in the legend
2008/11/13 13:16:33 1.19 drambald FancyGene/Paint.pm
2008/11/13 13:16:33 1.15 drambald FancyGene/Scale.pm
Scale inside legend
2008/11/13 10:16:25 1.31 drambald fancygene.pl
upgrade to javascript code in order to improve IE compatibility
2008/11/07 13:25:40 1.30 drambald fancygene.pl
Changed the appereance of result interface
2008/11/06 13:35:08 1.24 drambald FancyGene/Config.pm
2008/11/06 13:35:08 1.1 drambald bugreport.pl
Added a bugreport.pl mailer (Mail::Sender) that send bugs to the admin
2008/11/06 11:11:18 1.23 drambald FancyGene/Config.pm
Config chaged to use UCSC mysql repository
2008/11/05 16:25:35 1.29 drambald fancygene.pl
small changes to the interface
2008/11/05 15:03:25 1.18 drambald FancyGene/Paint.pm
2008/11/05 15:03:25 1.28 drambald FancyGene/Load.pm
2008/11/05 15:03:25 1.13 drambald FancyGene/Errors.pm
2008/11/05 15:03:25 1.28 drambald fancygene.pl
XML file to store configuration and config save as XML file (to restore user config), must update HELP
2008/11/05 11:40:16 1.17 drambald FancyGene/Paint.pm
legend balanced
2008/10/15 10:07:11 1.27 drambald FancyGene/Load.pm
remove a check for octect files that raise an error using gff or .gtf files
2008/09/17 16:31:59 1.26 drambald FancyGene/Load.pm
2008/09/17 16:31:59 1.27 drambald fancygene.pl
Resolved a BUG fancygene.pl and Load.pm (SMART domains parsing)
2008/09/17 15:49:19 1.16 drambald FancyGene/Paint.pm
2008/09/17 15:49:19 1.26 drambald fancygene.pl
Resolved a BUG fancygene.pl (order, data now are getted from the fancyobject)
2008/09/17 15:10:51 1.15 drambald FancyGene/Paint.pm
2008/09/17 15:10:51 1.25 drambald FancyGene/Load.pm
2008/09/17 15:10:51 1.22 drambald FancyGene/Config.pm
2008/09/17 15:10:51 1.12 drambald FancyGene/Errors.pm
2008/09/17 15:10:51 1.25 drambald fancygene.pl
Resolved a BUG in PDF file dimension when there are too much objects
2008/09/03 10:29:16 1.24 drambald FancyGene/Load.pm
simple mode labeling
2008/09/01 10:53:32 1.23 drambald FancyGene/Load.pm
2008/09/01 10:53:32 1.21 drambald FancyGene/Config.pm
2008/09/01 10:53:32 1.24 drambald fancygene.pl
Gene Refseq wixard 2.0, with name2 expansion
2008/09/01 09:36:05 1.14 drambald FancyGene/Paint.pm
2008/09/01 09:36:05 1.22 drambald FancyGene/Load.pm
2008/09/01 09:36:00 1.23 drambald fancygene.pl

Last update before crash of the server
2008/07/21 14:25:43 1.21 drambald FancyGene/Load.pm
2008/07/21 14:25:43 1.20 drambald FancyGene/Config.pm
2008/07/21 14:25:43 1.18 drambald FancyGene/Data.pm
2008/07/21 14:25:43 1.11 drambald FancyGene/Errors.pm
2008/07/21 14:25:43 1.22 drambald fancygene.pl
The WIZARD backbone
2008/07/18 09:45:06 1.13 drambald FancyGene/Paint.pm
2008/07/18 09:45:06 1.20 drambald FancyGene/Load.pm
2008/07/18 09:45:06 1.19 drambald FancyGene/Config.pm
2008/07/18 09:45:06 1.17 drambald FancyGene/Data.pm
2008/07/18 09:45:06 1.21 drambald fancygene.pl
Working on interface, strand under the gene label, some BUG (FC bugs) resolved
2008/07/09 14:24:14 1.20 drambald fancygene.pl
making standard xhtml page
2008/07/07 09:53:36 1.12 drambald FancyGene/Paint.pm
2008/07/07 09:53:36 1.19 drambald FancyGene/Load.pm
2008/07/07 09:53:36 1.18 drambald FancyGene/Config.pm
2008/07/07 09:53:36 1.14 drambald FancyGene/Scale.pm
2008/07/07 09:53:36 1.16 drambald FancyGene/Data.pm
2008/07/07 09:53:36 1.10 drambald FancyGene/Errors.pm
2008/07/07 09:53:36 1.19 drambald fancygene.pl
Legend
2008/07/03 13:49:08 1.13 drambald FancyGene/Scale.pm
Strand arrow in exon or utr moved to subroutine
2008/07/03 13:36:50 1.12 drambald FancyGene/Scale.pm
2008/07/03 13:36:49 1.11 drambald FancyGene/Paint.pm
2008/07/03 13:36:49 1.18 drambald FancyGene/Load.pm
2008/07/03 13:36:49 1.17 drambald FancyGene/Config.pm
2008/07/03 13:36:49 1.18 drambald fancygene.pl
Strand arrow in exon or utr
2008/07/02 15:40:40 1.17 drambald FancyGene/Load.pm
2008/07/02 15:40:40 1.17 drambald fancygene.pl
Interface: level 2 - all is ok remain: check user input
2008/07/01 14:02:42 1.16 drambald FancyGene/Load.pm
2008/07/01 14:02:42 1.16 drambald FancyGene/Config.pm
2008/07/01 14:02:42 1.15 drambald FancyGene/Data.pm
2008/07/01 14:02:42 1.16 drambald fancygene.pl
Interface and options
2008/06/27 11:53:01 1.10 drambald FancyGene/Paint.pm
2008/06/27 11:53:01 1.11 drambald FancyGene/Scale.pm
Domain LABELS
2008/06/27 09:46:06 1.15 drambald fancygene.pl
Domains END of development part 2
2008/06/26 09:51:14 1.9 drambald FancyGene/Paint.pm
2008/06/26 09:51:14 1.15 drambald FancyGene/Load.pm
2008/06/26 09:51:14 1.15 drambald FancyGene/Config.pm
2008/06/26 09:51:14 1.10 drambald FancyGene/Scale.pm
2008/06/26 09:51:14 1.14 drambald FancyGene/Data.pm
2008/06/26 09:51:14 1.14 drambald fancygene.pl
Domains part 2
2008/06/18 16:48:48 1.8 drambald FancyGene/Paint.pm
2008/06/18 16:48:48 1.14 drambald FancyGene/Load.pm
2008/06/18 16:48:48 1.14 drambald FancyGene/Config.pm
2008/06/18 16:48:48 1.9 drambald FancyGene/Scale.pm
2008/06/18 16:48:48 1.13 drambald FancyGene/Data.pm
2008/06/18 16:48:48 1.13 drambald fancygene.pl
Domain: multiplication by 3, problems in OUTPUT (multiplication 2 times)
2008/06/16 13:29:45 1.7 drambald FancyGene/Paint.pm
2008/06/16 13:29:45 1.13 drambald FancyGene/Load.pm
2008/06/16 13:29:45 1.13 drambald FancyGene/Config.pm
2008/06/16 13:29:45 1.8 drambald FancyGene/Scale.pm
2008/06/16 13:29:45 1.9 drambald FancyGene/Errors.pm
Parameters Binding
2008/06/13 16:31:22 1.6 drambald FancyGene/Paint.pm
2008/06/13 16:31:22 1.12 drambald FancyGene/Load.pm
2008/06/13 16:31:22 1.12 drambald FancyGene/Config.pm
2008/06/13 16:31:22 1.7 drambald FancyGene/Scale.pm
2008/06/13 16:31:22 1.12 drambald FancyGene/Data.pm
2008/06/13 16:31:22 1.8 drambald FancyGene/Errors.pm
2008/06/13 16:31:22 1.12 drambald fancygene.pl
Interface Building, CGI side
2008/06/11 16:13:17 1.5 drambald FancyGene/Paint.pm
2008/06/11 16:13:17 1.11 drambald FancyGene/Load.pm
2008/06/11 16:13:17 1.11 drambald FancyGene/Config.pm
2008/06/11 16:13:17 1.6 drambald FancyGene/Scale.pm
2008/06/11 16:13:17 1.11 drambald FancyGene/Data.pm
2008/06/11 16:13:17 1.7 drambald FancyGene/Errors.pm
2008/06/11 16:13:17 1.11 drambald fancygene.pl
Domains! Code started
2008/06/09 13:30:37 1.10 drambald FancyGene/Load.pm
Minor changes
2008/06/09 13:30:09 1.10 drambald FancyGene/Data.pm

Write object to file
2008/06/09 13:29:30 1.10 drambald fancygene.pl

No TAINT mode with DBM::Deep (Insecure dependency using -T switch)
2008/05/20 16:43:39 1.4 drambald FancyGene/Paint.pm
2008/05/20 16:43:39 1.9 drambald FancyGene/Load.pm
2008/05/20 16:43:39 1.10 drambald FancyGene/Config.pm
2008/05/20 16:43:39 1.5 drambald FancyGene/Scale.pm
2008/05/20 16:43:39 1.9 drambald FancyGene/Data.pm
2008/05/20 16:43:39 1.9 drambald fancygene.pl
Version 1.0 restored: a BUG in markers, now only one word markers are allowed. Next is start work on the HTML and javascript part
2008/05/19 17:13:45 1.3 drambald FancyGene/Paint.pm
2008/05/19 17:13:45 1.9 drambald FancyGene/Config.pm
2008/05/19 17:13:45 1.4 drambald FancyGene/Scale.pm
2008/05/19 17:13:45 1.8 drambald FancyGene/Data.pm
2008/05/19 17:13:45 1.8 drambald fancygene.pl
Working on Paint: paint gene and labels, remain to fix some BUGS into the overlapping check for labels
2008/05/18 12:52:18 1.2 drambald FancyGene/Paint.pm
2008/05/18 12:52:18 1.8 drambald FancyGene/Config.pm
2008/05/18 12:52:18 1.3 drambald FancyGene/Scale.pm
2008/05/18 12:52:18 1.7 drambald FancyGene/Data.pm
2008/05/18 12:52:18 1.2 drambald FancyGene/Ticks.pm
2008/05/18 12:52:18 1.7 drambald fancygene.pl
Big Update: start Paint.pm, locus and ticksmarks are OK, next is draw gene
2008/05/18 11:47:47 1.1 drambald FancyGene/Paint.pm
Added Paint.pm module
2008/05/18 09:59:09 1.1 drambald FancyGene/Ticks.pm

Added file Ticks.pm tickmarks
2008/05/13 17:01:01 1.7 drambald FancyGene/Config.pm
2008/05/13 17:01:01 1.2 drambald FancyGene/Scale.pm
2008/05/13 17:01:01 1.6 drambald FancyGene/Data.pm
2008/05/13 17:01:01 1.6 drambald FancyGene/Errors.pm
2008/05/13 17:01:01 1.6 drambald fancygene.pl
Scale.pm start: locus scale
2008/05/13 15:39:17 1.1 drambald FancyGene/Scale.pm
New source file: FancyGene::Scale for scale gene
2008/05/13 14:28:12 1.8 drambald FancyGene/Load.pm
2008/05/13 14:28:12 1.6 drambald FancyGene/Config.pm
2008/05/13 14:28:12 1.5 drambald FancyGene/Data.pm
2008/05/13 14:28:11 1.5 drambald fancygene.pl
End of data loading, method write_data to write data to the temporary file
2008/04/30 14:09:51 1.4 drambald FancyGene/Data.pm
small changes in Data.pm
2008/04/30 12:00:58 1.7 drambald FancyGene/Load.pm
2008/04/30 12:00:58 1.5 drambald FancyGene/Config.pm
2008/04/30 12:00:58 1.3 drambald FancyGene/Data.pm
Added to Data.pm the auto introns and auto locus methods. Next step is generate temp files
2008/04/29 15:50:34 1.6 drambald FancyGene/Load.pm
2008/04/29 15:50:34 1.4 drambald FancyGene/Config.pm
2008/04/29 15:50:34 1.2 drambald FancyGene/Data.pm
2008/04/29 15:50:34 1.5 drambald FancyGene/Errors.pm
2008/04/29 15:50:34 1.4 drambald fancygene.pl
Data.pm: handle data and checks, multiple locus and manual locus OK, next TODO intron autodraw
2008/04/29 11:34:59 1.1 drambald FancyGene/Data.pm
OO module to handle data
2008/04/29 11:27:16 1.5 drambald FancyGene/Load.pm
2008/04/29 11:27:16 1.3 drambald FancyGene/Config.pm
2008/04/29 11:27:16 1.4 drambald FancyGene/Errors.pm
2008/04/29 11:27:16 1.3 drambald fancygene.pl
Implemented GFF and GTF loader: next step is load parameters
2008/04/28 17:03:12 1.4 drambald FancyGene/Load.pm
2008/04/28 17:03:12 1.3 drambald FancyGene/Errors.pm
Working on load GFF and GTF files
2008/04/24 16:51:48 1.3 drambald FancyGene/Load.pm
2008/04/24 16:51:48 1.2 drambald FancyGene/Config.pm
2008/04/24 16:51:48 1.2 drambald FancyGene/Errors.pm
2008/04/24 16:51:48 1.2 drambald fancygene.pl
working on the Load.pm system TODO: gff and gtf loader
2008/04/23 17:10:24 1.2 drambald FancyGene/Load.pm
just testing CVS
2008/04/23 17:04:56 1.1.1.1 drambald FancyGene/Load.pm
initial import into cvs
2008/04/23 17:04:56 1.1 drambald FancyGene/Load.pm
branches: 1.1.1;
Initial revision
2008/04/23 17:04:56 1.1.1.1 drambald FancyGene/Config.pm
initial import into cvs
2008/04/23 17:04:56 1.1 drambald FancyGene/Config.pm
branches: 1.1.1;
Initial revision
2008/04/23 17:04:56 1.1.1.1 drambald FancyGene/Errors.pm
initial import into cvs
2008/04/23 17:04:56 1.1 drambald FancyGene/Errors.pm
branches: 1.1.1;
Initial revision
2008/04/23 17:04:56 1.1.1.1 drambald fancygene.pl
initial import into cvs
2008/04/23 17:04:56 1.1 drambald fancygene.pl
branches: 1.1.1;
Initial revision

File made using version 1.1 of cvs2html by drambald at 2009-06-04 10:20